Typhi Mykrobe: Fast and Accurate Lineage Identification and Antimicrobial Resistance Genotyping Directly from Sequence Reads for the Typhoid Fever Agent Salmonella Typhi Danielle J. Ingle , Jane J. Hawkey , Martin Hunt , Zamin Iqbal , Jacqueline Keane , Ayorinde Oluwatobiloba Afolayan , Niyaz Ahmed , Saadia Andleeb , Philip M Ashton , Isaac I. Bogoch , Megan E. Carey , Marie Anne Chattaway , John A Crump , Paula Diaz Guevara , Benjamin Howden , Hidemasa Izumiya , Jobin John Jacob , Louise M Judd , Arti Kapil , Karen H Keddy , Justin Kim , Myron M Levine , Masatomo Morita , Satheesh Nair , Sophie Octavia , Iruka N Okeke , Precious Osadebamwen , Sadia Isfat Ara Rahman , Assaf Rokney , David Rasko , Varun Shamanna , Michael J. Sikorski , Anthony M Smith , Gabriel T Sunmonu , Kaitlin A Tagg , Ryan R Wick , Zoe A Dyson , Kat Holt , Global Typhoid Genomics Consortium biorxiv（2024）
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