Dr. Denny was the recipient of the Homer Warner award from the American Medical Informatics Association (AMIA) in 2008 and 2009 and AMIA New Investigator Award in 2012. He is an elected member of the National Academy of Medicine, the American College of Medical Informatics, and the American Society for Clinical Investigation. He currently serves as the Chief Executive Officer of the National Institutes of Health's All of Us Research Program.